AnnotationDbi | Annotation Database Interface |
base | The R Base Package |
Biobase | Biobase: Base functions for Bioconductor |
BiocGenerics | Generic functions for Bioconductor |
BiocInstaller | Install/Update Bioconductor and CRAN Packages |
boot | Bootstrap Functions (originally by Angelo Canty for S) |
class | Functions for Classification |
cluster | Cluster Analysis Extended Rousseeuw et al. |
codetools | Code Analysis Tools for R |
compiler | The R Compiler Package |
corpcor | Efficient Estimation of Covariance and (Partial) Correlation |
datasets | The R Datasets Package |
DBI | R Database Interface |
DynDoc | Dynamic document tools |
e1071 | Misc Functions of the Department of Statistics (e1071), TU Wien |
edgeR | Empirical analysis of digital gene expression data in R |
fastICA | FastICA Algorithms to perform ICA and Projection Pursuit |
fdrtool | Estimation of (Local) False Discovery Rates and Higher Criticism |
foreign | Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, Weka,
dBase, ... |
GeneCycle | Identification of Periodically Expressed Genes |
graphics | The R Graphics Package |
grDevices | The R Graphics Devices and Support for Colours and Fonts |
grid | The Grid Graphics Package |
Heatplus | Heatmaps with row and/or column covariates and colored clusters |
IRanges | Infrastructure for manipulating intervals on sequences |
KernSmooth | Functions for kernel smoothing for Wand & Jones (1995) |
lattice | Lattice Graphics |
limma | Linear Models for Microarray Data |
longitudinal | Analysis of Multiple Time Course Data |
maSigPro | Significant Gene Expression Profile Differences in Time Course
Microarray Data |
MASS | Support Functions and Datasets for Venables and Ripley's MASS |
Matrix | Sparse and Dense Matrix Classes and Methods |
methods | Formal Methods and Classes |
Mfuzz | Soft clustering of time series gene expression data |
mgcv | Mixed GAM Computation Vehicle with GCV/AIC/REML smoothness
estimation |
nlme | Linear and Nonlinear Mixed Effects Models |
nnet | Feed-forward Neural Networks and Multinomial Log-Linear Models |
parallel | Support for Parallel computation in R |
rpart | Recursive Partitioning |
RSQLite | SQLite interface for R |
spatial | Functions for Kriging and Point Pattern Analysis |
splines | Regression Spline Functions and Classes |
stats | The R Stats Package |
stats4 | Statistical Functions using S4 Classes |
survival | Survival Analysis |
tcltk | Tcl/Tk Interface |
tkWidgets | R based tk widgets |
tools | Tools for Package Development |
utils | The R Utils Package |
widgetTools | Creates an interactive tcltk widget |